PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 486259
Common NameARALYDRAFT_486259
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 253aa    MW: 28251.7 Da    PI: 7.6809
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
486259genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.45.2e-0592114123
              EEETTTTEEESSHHHHHHHHHHT CS
  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
              ++C++C + F+++  L  H++ H
   486259  92 FECHYCFRNFPTSQALGGHQNAH 114
              89******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.28E-688119No hitNo description
PfamPF139122.0E-591116IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.9992119IPR007087Zinc finger, C2H2
PROSITE patternPS00028094114IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0010091Biological Processtrichome branching
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MDEAARETET QDFMNVESFS QLPFIRRPKD KNPKPIRVFG KDFTGGGFSS TTGQEDYSDP  60
YQTKDKEEEE EEEDQTGDNS KDNNSISNNR RFECHYCFRN FPTSQALGGH QNAHKRERQL  120
AKRGVPSYFY HPDNNPYSYR HYPSWTSGPL TAARSYGGYA SGPQLSAYYT RPSYGSQLGL  180
WRLPPRVQGV YNSNAALTSN GSSSNSSLPL LAGSRTQLPS QVGGSAAQNR MSSYRYGLSS  240
NVQDHVSLDL HL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1370810.0AL137081.1 Arabidopsis thaliana DNA chromosome 3, BAC clone F9D24.
GenBankBT0033400.0BT003340.1 Arabidopsis thaliana zinc finger-like protein (At3g58070) mRNA, complete cds.
GenBankBT0096760.0BT009676.1 Arabidopsis thaliana At3g58070 mRNA, complete cds.
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002878184.10.0hypothetical protein ARALYDRAFT_486259
SwissprotQ84WI01e-155GIS_ARATH; Zinc finger protein GIS
TrEMBLD7LVZ70.0D7LVZ7_ARALL; Putative uncharacterized protein
STRINGfgenesh2_kg.5__2251__AT3G58070.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24951949
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58070.11e-129C2H2 family protein